Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LIHC | rs112075473 | chr2:202355572 | G/A | 0 | 192 | 13.58 | 11.13 | 0.37 | KM Plot |
| LIHC | rs112107185 | chr20:61824118 | G/A | 4.32E-12 | 188 | 13.08 | 13.97 | 0.47 | KM Plot |
| LIHC | rs112236201 | chr2:202238896 | C/T | 0 | 189 | 13.35 | 13.38 | 0.37 | KM Plot |
| LIHC | rs11232208 | chr11:70847924 | T/C | 0.000186 | 190 | 13.8 | 3.68 | 0 | KM Plot |
| LIHC | rs11232209 | chr11:70847969 | C/T | 0.000186 | 190 | 13.8 | 3.68 | 0 | KM Plot |
| LIHC | rs11235841 | chr11:73367122 | T/C | 2.72E-5 | 188 | 13.57 | 12.43 | 1.87 | KM Plot |
| LIHC | rs11235911 | chr11:73517259 | A/G | 1.0E-5 | 190 | 13.55 | 12.43 | 1.87 | KM Plot |
| LIHC | rs11235918 | chr11:73532857 | C/T | 1.41E-5 | 192 | 13.57 | 12.8 | 1.87 | KM Plot |
| LIHC | rs11235928 | chr11:73564719 | T/C | 1.2E-5 | 192 | 13.57 | 12.8 | 1.87 | KM Plot |
| LIHC | rs11235950 | chr11:73633622 | G/A | 1.36E-5 | 191 | 13.53 | 13.17 | 1.87 | KM Plot |
| LIHC | rs11235951 | chr11:73638858 | C/T | 1.36E-5 | 191 | 13.53 | 13.17 | 1.87 | KM Plot |
| LIHC | rs112405622 | chr12:112314705 | T/TACAA | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs112426410 | chr12:112407438 | A/G | 6.38E-6 | 191 | 12.57 | 14.98 | 5.17 | KM Plot |
| LIHC | rs1124828 | chr4:44713235 | A/G | 2.82E-6 | 192 | 3.37 | 13.55 | 16.07 | KM Plot |
| LIHC | rs112487376 | chr11:73445328 | G/A | 1.52E-5 | 189 | 13.53 | 13.17 | 1.87 | KM Plot |